Software

MassBlast – A software workflow to accelarate Genome and Transcriptome data analysis.

ORF Finder – Online app that finds the longest Open Reading Frame (ORF) from a nucleotide sequence in all 6 reading frames.

Protein Expression Prediction

BoneSim – software to simulate bone remodelling and therapy

BGFIT

BGFit – A platform with a rich set of dynamic models that can be fitted to experimental time-series data.

SON-EM – Algorithm for parameter estimation of hybrid time-varying parameter systems using Sum of Norms regularization and Expectation Maximization.

KiMoSys

KimoSys – A web application for quantitative KInetic MOdels of biological SYStems.

META

Entropic Profiler (old version also available here)

RényiDNA

W-metric

NASC (non-aligned sequence comparison) toolbox